Nutrient guides

Manganese Deficiency in Plants: Signs, Causes and How to Fix It

Manganese deficiency in plants starts on the young leaves and the growing tip. Manganese switches on many enzymes and works in the part of photosynthesis that splits water and releases oxygen. It also helps the plant make chlorophyll and protein. Here are the signs in each crop, what brings it, how to be sure and the fertilizer that fixes it.

8 min read Updated October 18, 2026 By the anee.io agriculture team Read it all with Libre + Anee
Tobacco leaf with pale, speckled areas between the veins: a manganese shortage sign
Photo: R.J. Reynolds Tobacco Company, R.J. Reynolds Tobacco Company, Bugwood, CC BY 3.0 US, via ipmimages.org

Manganese is very immobile in the plant, so the first signs show on the young leaves. The old leaves stay green until the shortage gets severe.

Manganese deficiency symptoms

Young leaves turn pale yellow between the veins, often as a fine mottle of tiny yellow spots, while the veins stay green. Rice and corn show grayish green specks or streaks on the young leaves, which later turn yellow, orange and brown. New leaves come out short and narrow, and plants stay small with smaller roots. In rice, plants short of manganese also get more brown spot disease.

Manganese deficiency by crop

Each crop shows it its own way. So find yours in the tables below, then open its page for the photo and the full fix, like the one for manganese in rice.

Rice

Manganese deficiency in rice
CropThe first signFix with
PalayYoung leaves turn greyish green between the veins from the tip down, then get brown spots.Manganese sulfate, Ammonium sulfate 21 0 0

Legumes

Manganese deficiency in legumes
CropThe first signFix with
ManiLeaves pale between the veins and plants stay short, often after heavy liming.Manganese sulfate
UtawLeaves pale green to yellow between green veins, later with brown spots, often after liming.Manganese sulfate
SitawNew leaves pale between green veins, often where lime was spread heavily.Manganese sulfate
PaayapYoung leaves pale between green veins, later with brown spots, often on limed sandy soil.Manganese sulfate
PataniTop leaves turn yellow between green veins, often where the soil was limed too much.Manganese sulfate

Root Crops

Manganese deficiency in root crops
CropThe first signFix with
UbiYoung leaves show fine pale, sunken spots between the veins that turn into dead spots, on limey soil.Manganese sulfate
LabanosA general yellowing of the leaves about midway through the season, on high pH soil.Manganese sulfate
Luyang dilawNew leaves look mottled, light green to yellow green between the veins.Manganese sulfate

Vegetables

Manganese deficiency in vegetables
CropThe first signFix with
KamatisYoung leaves get orange yellow mottling between green veins with tiny dark brown dots.Manganese sulfate
PipinoMiddle and upper leaves turn pale yellow while the veins stay green.Manganese sulfate
SiliYoung leaves are mottled yellow with a fine net of green veins and dark spots along the veins.Manganese sulfate
AtsalYoung leaves go pale between the veins while even the small veins stay dark green.Manganese sulfate

Onion and Garlic

Manganese deficiency in onion and garlic
CropThe first signFix with
SibuyasOlder leaves yellow between veins, tips burn and curl, and bulbs have thick necks.Manganese sulfate

Sugarcane and Industrial Crops

Manganese deficiency in sugarcane and industrial crops
CropThe first signFix with
TuboPale stripes on the young leaves start in the middle of the blade and run to the tip. The leaves split in the wind.Manganese sulfate
TabakoYellow netting between the veins with small white spots, on fields that were limed too much.Manganese sulfate

Fruits and Plantation Crops

Manganese deficiency in fruits and plantation crops
CropThe first signFix with
SagingThe second or third youngest leaf yellows from the edge inward along the veins, like the teeth of a comb.Manganese sulfate
ManggaLeaves just reaching full size turn yellowish green with a fine net of green veins and grey specks.Manganese sulfate
NiyogNew fronds come out yellow with dead streaks, then wither and frizzle. Leaflet tips drop off.Manganese sulfate
KalamansiYoung full size leaves pale between the veins with broad dark green bands along the veins. Leaf size stays normal.Manganese sulfate, Urea 46 0 0
Citrus, dalandan or ponkanYoung and medium leaves light green between dark green vein bands. Leaves keep their size. Fruit pale and soft.Manganese sulfate, Urea 46 0 0
SapodillaPale yellow between the veins with wide green bands along the veins, light spots and early leaf drop.Manganese sulfate

What causes manganese deficiency

Manganese shortage comes on calcareous, alkaline and over limed soils, because high pH locks it up. Neutral soils high in organic matter, leached sandy soils, and old, highly weathered or degraded soils low in manganese also run short. Upland rice and other dryland crops suffer more than flooded rice, because flooding makes manganese more soluble.

How to be sure it is manganese

Iron shortage also yellows young leaves, but it is a smooth yellow that can turn white, while manganese gives a speckled mottle. Magnesium shortage looks alike between the veins but starts on the old leaves, and manganese shortage often comes with phosphorus shortage. A soil test for manganese at a DA Regional Soils Laboratory, read together with the soil pH, shows the risk. A leaf tissue test is the more accurate check, because it measures what the plant actually takes up.

How to fix manganese deficiency

On high pH soils the soil ties up manganese fast. So band manganese sulfate near the row or spray it instead of broadcasting. Use ammonium sulfate instead of urea to acidify the root zone. Add manure or straw where soil manganese and organic matter are low. Let the soil and tissue tests decide the rate.

Manganese sulfate works well as a spray. A typical rate in a Haifa vegetable guide is about 100 grams per 100 liters of water. Two or three sprays are sometimes needed for a full response.

Fertilizers sold here that supply manganese

Registered with the FPA. Follow the label and your soil test
ProductMade or sold byWhat it holdsUse
Manganese SulfateZetryl Chem31 percent manganeseSoil or leaves
TuranSCL Filipinas11 percent manganese, 6 percent zinc and 2.8 percent copperSoil or leaves
Tierramino MNUnilox Far East Resources7 0 0 with 12 percent manganeseOn the leaves
Cambiar Lsa CombiDonato C. Cruz2 percent manganese, 1 percent zinc and 0.5 percent copperSoil or leaves
MultimateAgway4 0 0 with 4.5 percent sulfur, 2.8 percent zinc and 1.8 percent manganeseOn the leaves
Nutri Tabble Meta FoliarNS Northern Organic Fertilizer12 percent zinc, 9 percent sulfur, 2 percent magnesium and 1.2 percent manganeseOn the leaves
Nutri Tabble MetaBon Affaire12 percent zinc, 9 percent sulfur, 2 percent magnesium and 1.2 percent manganeseOn the soil
Dumangan Prime FertilizerDumangan Prime3 percent zinc, 3 percent iron, 3 percent manganese and 1 percent boronSoil or leaves

For rates and timing, see our guides to foliar fertilizer and to fertilizer application methods. Also, anee.io keeps every application on the cropping calendar, so you know what went on each lot and when.

How to keep manganese deficiency away

Do not over lime, and on soils known to be low in manganese keep the pH near neutral rather than high. Use acidifying fertilizers such as ammonium sulfate and keep returning organic matter.

Too much is a problem too

On strongly acid soils below about pH 5.5, manganese turns toxic, giving crumpled leaves with dark brown specks and dead leaf edges. Toxic manganese levels have also been found in Central Luzon rice soils, and liming acid soils is the usual cure.

Find the missing nutrient in anee.io

Pick your crop in the Nutrient Deficiency Finder, say where the leaves changed first and what you see, and get the fertilizers sold here that fix it.

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Manganese deficiency questions

What does manganese deficiency look like?
Young leaves turn pale between green veins, often as a fine speckled mottle, and later show brown spots. In rice and corn the young leaves show grayish green specks or streaks.
What is the best fertilizer for manganese deficiency?
Manganese sulfate is the most common source, used as a spray or banded near the row. Broadcasting it on high pH soil works poorly because the soil ties it up.
Why does my soil have manganese but my plants are short of it?
High pH and lots of organic matter lock manganese into forms roots cannot take, even when the soil holds plenty. A leaf tissue test shows what the plant really gets.
Can too much manganese harm my crop?
Yes. On very acid soils below about pH 5.5, manganese can turn toxic and crumple the leaves with dark specks. Liming the soil by the soil test fixes it.

Find the missing nutrient and fix it

With Libre + Anee, read the whole guide: how to tell the deficiency from look alikes, how to be sure, what to apply, and the fertilizers sold here that supply it.

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